Two sample MR report


Telomere_length against ThalamNuclei lh volume VM

Date: 22 April, 2022


Results from two sample MR:

method nsnp b se pval
MR Egger 23 0.0458201 0.1218387 0.7106363
Weighted median 23 0.0591571 0.0595623 0.3206141
Inverse variance weighted 23 0.0256914 0.0465526 0.5810309
Simple mode 23 0.0992983 0.0989134 0.3263460
Weighted mode 23 0.0761228 0.0808763 0.3568106

Heterogeneity tests

method Q Q_df Q_pval
MR Egger 31.54804 21 0.0650083
Inverse variance weighted 31.59643 22 0.0845414

Test for directional horizontal pleiotropy

egger_intercept se pval
-0.0012359 0.006886 0.8592827

Test that the exposure is upstream of the outcome

snp_r2.exposure snp_r2.outcome correct_causal_direction steiger_pval
0.0357937 0.0009706 TRUE 0

Note - R2 values are approximate


Forest plot of single SNP MR

plot of chunk chunk5


Comparison of results using different MR methods

plot of chunk chunk6


Funnel plot

plot of chunk chunk7


Leave-one-out sensitivity analysis

plot of chunk chunk8